Software Expertise

Imaris 3D Imaging & Processing

The ABIF always has the most current and up-to-date version of Imaris from Bitplane. Both our workstations have this software complete with a MATLAB plugin for advanced image analysis. 
Use this software for:

  • 3D reconstruction
  • Filament tracing (i.e. neuron dendrites)
  • Protein colocalization
  • Cell tracking
  • Expression (intensity) analysis
  • And more!


MetaMorph and MetaXpress

MetaMorph and MetaXpress software are available on our workstations as well as our High Content Screening microscope computer. Use MetaMorph software for:

  • Cell migration tracking
  • Cell scoring 
  • Cell counting
  • Mitosis/Cell cycle
  • Cytotoxicity and apoptosis
  • And more!



ImagePro Premier

Use this software for:

  • 3D colocalization
  • Smart segmentation
  • Counting and intensity measurements
  • Spatial distribution
  • Tracking


AutoQuant Deconvolution

Choose your method of acquisition (laser scanning confocal, widefield fluorescence, etc.), your color channels, optical settings, and click GO. Deconvolve all your files fast and efficiently with plugins for Imaris, FIJI, and MetaMorph built directly into the software.



FIJI (ImageJ)

This software is very customizable. Learn how to write your own algorithms and plugins.
Use this software for:

  • Image intensity processing
  • Segmentation
  • Colocalization analysis
  • Particle analysis
  • Tracking
  • And more!