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Honours Biology - Quantitative Biology (79 credits)

Offered by: Biology     Degree: Bachelor of Science

Program Requirements

(74-79 credits)

Interdisciplinary research that draws from the natural and physical sciences is an important aspect of modern biology. The Quantitative Biology (QB) Honours option is designed for students with a deep interest in biology who wish to gain a strong grounding in physical sciences and their application to biological questions through both coursework and a research project. The QB B.Sc. Honours option has two streams: a theoretical ecology and evolutionary biology stream and a physical biology stream. Both streams provide a balance of theory and experimental components that along with a research component will provide outstanding preparation for graduate training. Students must attain a 3.50 CGPA to enter and to complete the Honours program. First Class Honours will be awarded to students in the QB Honours option graduating with a CGPA of 3.75 or greater.

Students may complete this program with a minimum of 74 credits or a maximum of 79 credits depending on whether MATH 222 and CHEM 212 are completed.

Advising notes for U0 students

It is highly recommended that freshman BIOL, CHEM, MATH, and PHYS courses be selected with the Program Adviser to ensure they meet the core requirements of the Quantitative Biology option.

This program is recommended for U1 students achieving a CGPA of 3.20 or better; and entering CEGEP students with a Math/Science R-score of 28.0 or better.

Required Courses (48 credits)

(44-48 credits)

Biology (17 credits)

  • BIOL 200 Molecular Biology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : The physical and chemical properties of the cell and its components in relation to their structure and function. Topics include: protein structure, enzymes and enzyme kinetics; nucleic acid replication, transcription and translation; the genetic code, mutation, recombination, and regulation of gene expression.

    Terms: Fall 2014

    Instructors: Thomas E Bureau, Richard D W Roy, Monique Zetka, Francesco Fagotto (Fall)

    • Fall
    • 3 hours lecture, 1 hour optional tutorial
    • Prerequisite: BIOL 112 or equivalent
    • Corequisite: CHEM 212 or equivalent
  • BIOL 201 Cell Biology and Metabolism (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : This course introduces the student to our modern understanding of cells and how they work. Major topics to be covered include: photosynthesis, energy metabolism and metabolic integration; plasma membrane including secretion, endocytosis and contact mediated interactions between cells; cytoskeleton including cell and organelle movement; the nervous system; hormone signaling; the cell cycle.

    Terms: Winter 2015

    Instructors: Gary Brouhard, Gregory G Brown (Winter)

    • Winter
    • 3 hours lecture, 1 hour optional tutorial
    • Prerequisite: BIOL 200.
    • Restriction: Not open to students who have taken or are taking ANAT 212 or BIOC 212
  • BIOL 202 Basic Genetics (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Introduction to basic principles, and to modern advances, problems and applications in the genetics of higher and lower organisms with examples representative of the biological sciences.

    Terms: Winter 2015

    Instructors: Daniel J Schoen, Nam Sung Moon, Shelton Hendricks (Winter)

    • Winter, Summer
    • 3 hours lecture, 1 hour optional tutorial
    • Prerequisite: BIOL 200.
    • Restriction: Not open to students who have taken or are taking LSCI 204.
  • BIOL 205 Biology of Organisms (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Unified view of form and function in animals and plants. Focus on how the laws of chemistry and physics illuminate biological processes relating to the acquisition of energy and materials and their use in movement, growth, development, reproduction and responses to environmental stress.

    Terms: Winter 2015

    Instructors: Rajinder S Dhindsa (Winter)

    • Winter
    • 3 hours lecture, optional conference hour
    • Prerequisites: BIOL 200 and PHYS 101 or 131 or equivalent
    • Corequisite: ANAT 212/BIOC 212 or BIOL 201
  • BIOL 215 Introduction to Ecology and Evolution (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : An introduction to the fundamental processes of ecology and evolution that bear on the nature and diversity of organisms and the processes that govern their assembly into ecological communities and their roles in ecosystem function.

    Terms: Fall 2014

    Instructors: Neil Price (Fall)

    • Fall
    • 3 hours lecture
    • Prerequisite: BIOL 111
    • Restriction: Not open to students who have taken ENVR 202
  • BIOL 395 Quantitative Biology Seminar 1 (1 credit)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Overview of concepts and current research in quantitative biology; theoretical ecology and evolution, computational biology, and physical biology.

    Terms: Fall 2014

    Instructors: Jacalyn Vogel, Frederic Guichard (Fall)

    • Fall
    • Prerequisites: BIOL 200, CHEM 212, COMP 250, MATH 222, PHYS 230
    • Restriction: Registration restricted to U2 students in the Quantitative Biology program, joint Computer Science and Biology and joint Math and Biology programs.
  • BIOL 495 Quantitative Biology Seminar 2 (1 credit)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Overview of concepts and current research in quantitative biology; theoretical ecology and evolution, computational biology, and physical biology.

    Terms: Fall 2014

    Instructors: Jacalyn Vogel, Frederic Guichard (Fall)

    • Fall
    • 1 hour seminar
    • Prerequisite: BIOL 395
    • Restriction: Registration is restricted to U3 students in the Quantitative Biology program, joint COMP-BIOL, BIOL-MATH, PHGY-MATH and PHGY-PHYS programs.

Research Component (6 credits)

  • BIOL 468 Independent Research Project 3 (6 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Independent research project.

    Terms: Fall 2014, Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall, Winter or Summer
    • Prerequisite: BIOL 206 or BIOL 301 or other suitable laboratory course
    • Restriction: Open only to Biology students. Not open to students who have taken BIOL 471 or BIOL 471D1/D2.
    • Projects must be arranged individually with a staff member of the Biology Department and a form from Nancy Nelson, Room W3/25, Stewart Building, must be completed prior to registration.

Chemistry (4 credits)

3-4 credits:

*Students who have taken the equivalent of CHEM 212 can make up the credits with a complementary 3 or 4 credit course in consultation with a stream adviser.

  • CHEM 212 Introductory Organic Chemistry 1 (4 credits) *

    Offered by: Chemistry (Faculty of Science)

    Overview

    Chemistry : A survey of reactions of aliphatic and aromatic compounds including modern concepts of bonding, mechanisms, conformational analysis, and stereochemistry.

    Terms: Fall 2014, Winter 2015

    Instructors: Michel Daoust, Mitchell Huot, Laura Pavelka, Youla S Tsantrizos (Fall) Michel Daoust, Mitchell Huot, Laura Pavelka, Jean-Philip Lumb, Jean-Marc Gauthier (Winter)

    • Fall, Winter, Summer
    • Prerequisite: CHEM 110 or equivalent.
    • Corequisite: CHEM 120 or equivalent.
    • Restriction: Not open to students who are taking or have taken CHEM 211 or equivalent
    • Each lab section is limited enrolment
    • Note: Some CEGEP programs provide equivalency for this course. For more information, please see the Department of Chemistry's Web page (http://www.chemistry.mcgill.ca/advising/outside/equivalent.htm).

Computer Science (3 credits)

3 credits from:

  • COMP 202 Foundations of Programming (3 credits)

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : Introduction to programming in a modern high-level language, modular software design and debugging. Programming concepts are illustrated using a variety of application areas.

    Terms: Fall 2014, Winter 2015

    Instructors: Jorg Andreas Kienzle (Fall)

    • 3 hours
    • Prerequisite: a CEGEP level mathematics course
    • Restrictions: COMP 202 and COMP 208 cannot both be taken for credit. COMP 202 is intended as a general introductory course, while COMP 208 is intended for students interested in scientific computation. COMP 202 cannot be taken for credit with or after COMP 250
  • COMP 250 Introduction to Computer Science (3 credits)

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : An introduction to the design of computer algorithms, including basic data structures, analysis of algorithms, and establishing correctness of programs. Overview of topics in computer science.

    Terms: Fall 2014, Winter 2015

    Instructors: Mathieu Blanchette, Jérôme Waldispuhl, Hamed Hatami (Fall) Martin Robillard (Winter)

    • 3 hours
    • Prerequisites: Familiarity with a high level programming language and CEGEP level Math.
    • Restrictions: COMP 203 and COMP 250 are considered to be equivalent from a prerequisite point of view, and cannot both be taken for credit.

Math and Physics Core Courses

(15-18 credits)

6 credits of either MATH or PHYS courses to be taken at the honours level. Honours equivalents of core Math and Physics courses are listed below. All 500-level Math courses are considered as honours courses and can be applied to the 6 credit requirement.

Math

9-12 credits from:

  • MATH 222 Calculus 3 (3 credits) *

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Taylor series, Taylor's theorem in one and several variables. Review of vector geometry. Partial differentiation, directional derivative. Extreme of functions of 2 or 3 variables. Parametric curves and arc length. Polar and spherical coordinates. Multiple integrals.

    Terms: Fall 2014, Winter 2015

    Instructors: Gantumur Tsogtgerel (Winter)

    • Prerequisite: MATH 141. Familiarity with vector geometry or Corequisite: MATH 133
    • Restriction: Not open to students who have taken CEGEP course 201-303 or MATH 150, MATH 151 or MATH 227
  • MATH 223 Linear Algebra (3 credits) **

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Review of matrix algebra, determinants and systems of linear equations. Vector spaces, linear operators and their matrix representations, orthogonality. Eigenvalues and eigenvectors, diagonalization of Hermitian matrices. Applications.

    Terms: Fall 2014, Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall and Winter
    • Prerequisite: MATH 133 or equivalent
    • Restriction: Not open to students in Mathematics programs nor to students who have taken or are taking MATH 236, MATH 247 or MATH 251. It is open to students in Faculty Programs
  • MATH 247 Honours Applied Linear Algebra (3 credits) **

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Matrix algebra, determinants, systems of linear equations. Abstract vector spaces, inner product spaces, Fourier series. Linear transformations and their matrix representations. Eigenvalues and eigenvectors, diagonalizable and defective matrices, positive definite and semidefinite matrices. Quadratic and Hermitian forms, generalized eigenvalue problems, simultaneous reduction of quadratic forms. Applications.

    Terms: Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Winter
    • Prerequisite: MATH 133 or equivalent.
    • Restriction: Intended for Honours Physics and Engineering students
    • Restriction: Not open to students who have taken or are taking MATH 236, MATH 223 or MATH 251
  • MATH 315 Ordinary Differential Equations (3 credits) +

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : First order ordinary differential equations including elementary numerical methods. Linear differential equations. Laplace transforms. Series solutions.

    Terms: Fall 2014, Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Prerequisite: MATH 222.
    • Corequisite: MATH 133.
    • Restriction: Not open to students who have taken or are taking MATH 325.
  • MATH 323 Probability (3 credits) ++

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Sample space, events, conditional probability, independence of events, Bayes' Theorem. Basic combinatorial probability, random variables, discrete and continuous univariate and multivariate distributions. Independence of random variables. Inequalities, weak law of large numbers, central limit theorem.

    Terms: Fall 2014, Winter 2015

    Instructors: Djivede Kelome (Winter)

    • Prerequisites: MATH 141 or equivalent.
    • Restriction: Intended for students in Science, Engineering and related disciplines, who have had differential and integral calculus
    • Restriction: Not open to students who have taken or are taking MATH 356
  • MATH 325 Honours Ordinary Differential Equations (3 credits) +

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : First and second order equations, linear equations, series solutions, Frobenius method, introduction to numerical methods and to linear systems, Laplace transforms, applications.

    Terms: Fall 2014, Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall and Winter
    • (3-0-6)
    • Prerequisite: MATH 222.
    • Restriction: Intended for Honours Mathematics, Physics and Engineering programs.
    • Restriction: Not open to students who have taken MATH 263 (formerly MATH 261), MATH 315
  • MATH 356 Honours Probability (3 credits) ++

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Sample space, probability axioms, combinatorial probability. Conditional probability, Bayes' Theorem. Distribution theory with special reference to the Binomial, Poisson, and Normal distributions. Expectations, moments, moment generating functions, uni-variate transformations. Random vectors, independence, correlation, multivariate transformations. Conditional distributions, conditional expectation.Modes of stochastic convergence, laws of large numbers, Central Limit Theorem.

    Terms: Fall 2014

    Instructors: Abbas Khalili Mahmoudabadi (Fall)

    • Fall
    • Prerequisite(s): MATH 133 or MATH 134, and MATH 222 or permisson of the Department.
    • Corequisite(s): MATH 242 or MATH 254

* For students who have NOT taken MATH 150 and MATH 151
** Students take MATH 223 or MATH 247
+ Students take MATH 315 or MATH 325
++ Students take MATH 323 or MATH 356

Physics

6 credits from:

  • PHYS 230 Dynamics of Simple Systems (3 credits) *

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Translational motion under Newton's laws; forces, momentum, work/energy theorem. Special relativity; Lorentz transforms, relativistic mechanics, mass/energy equivalence. Topics in rotational dynamics. Noninertial frames.

    Terms: Fall 2014

    Instructors: Tamar Pereg-Barnea (Fall)

    • Fall
    • 3 hours lectures
    • Prerequisite: CEGEP Physics or PHYS 131.
    • Corequisite: MATH 222
    • Restriction: Not open to students taking or having passed PHYS 251
  • PHYS 232 Heat and Waves (3 credits) **

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : The laws of thermodynamics and their consequences. Thermodynamics of P-V-T systems and simple heat engines. Free, driven, and damped harmonic oscillators. Coupled systems and normal modes. Fourier methods. Wave motion and dispersion. The wave equation.

    Terms: Winter 2015

    Instructors: Hong Guo (Winter)

    • Winter
    • 3 hours lectures
    • Prerequisites: CEGEP Physics or PHYS 142, and CEGEP chemistry or CHEM 120, and PHYS 230.
    • Restriction: Not open to students taking or having passed PHYS 253
  • PHYS 251 Honours Classical Mechanics 1 (3 credits) *

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Newton's laws, work energy, angular momentum. Harmonic oscillator, forced oscillations. Inertial forces, rotating frames. Central forces, centre of mass, planetary orbits, Kepler's laws.

    Terms: Fall 2014

    Instructors: Robert Brandenberger (Fall)

    • Fall
    • 3 hours lectures
    • Prerequisite: CEGEP physics or PHYS 131.
    • Corequisite: MATH 222
    • Restriction: Not open to students taking or having taken PHYS 230.
  • PHYS 253 Thermal Physics (3 credits) **

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Energy, work, heat; first law. Temperature, entropy; second law. Absolute zero; third law. Equilibrium, equations of state, gases, liquids, solids, magnets; phase transitions.

    Terms: Fall 2014

    Instructors: Walter Reisner (Fall)

    • Fall
    • 3 hours lectures
    • Prerequisites: CEGEP physics or PHYS 131, and CEGEP chemistry or CHEM 120.
    • Corequisite: MATH 222
    • Restriction: Not open to students taking or having taken PHYS 232.

* Students take PHYS 230 or PHYS 251
** Students take PHYS 232 or PHYS 253

Complementary Courses (30-31 credits)

Course Requirements for Quantitative Biology Streams

21 or 22 credits from one of the following two streams:

Stream 1: Theoretical Ecology and Evolutionary Biology (21 credits)

Biology
9 credits from the following:

  • BIOL 206 Methods in Biology of Organisms (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Introduction to modern methods used in organismal biology, including ecological sampling, experimental methods and statistics, taxonomic and phylogenetic analysis of biodiversity, experimental behavioural ecology, microbiological methods, and library search procedures.

    Terms: Fall 2014

    Instructors: Martin J Lechowicz, Andrea Miller-Nesbitt, Andrew Gonzalez (Fall)

    • Fall
    • 1.5 hours lecture, 3.5 hours laboratory and local field trip in week 2
    • Prerequisite: BIOL 111 or equivalent
  • BIOL 304 Evolution (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : This course will show how the theory of evolution by natural selection provides the basis for understanding the whole of biology. The first half of the course describes the process of selection, while the second deals with evolution in the long term.

    Terms: Fall 2014

    Instructors: Graham Bell (Fall)

    • Fall
    • 3 hours lecture
    • Prerequisite: BIOL 205 and BIOL 215 or ENVR 202
  • BIOL 308 Ecological Dynamics (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Principles of population, community, and ecosystem dynamics: population growth and regulation, species interactions, dynamics of competitive interactions and of predator/prey systems; evolutionary dynamics.

    Terms: Fall 2014

    Instructors: Gregor Fussmann, Frederic Guichard (Fall)

    • Fall
    • 3 hours lecture, 1 hour computer lab/tutorial
    • Prerequisite: BIOL 215 or both ENVR 200 and ENVR 202

Field Courses
3 credits from the following list or any other field course with permission:

  • BIOL 240 Monteregian Flora (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Field studies of ferns, fern allies, conifers and flowering plants; the use of keys for plant identification.

    Terms: This course is not scheduled for the 2014-2015 academic year.

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Prerequisite: BIOL 111 or permission
    • Restriction: Not open to students who have taken PLNT 358
    • Note: Taught at the Gault Nature Reserve. Contact instructor for specific dates, logistics: (martin [dot] lechowicz [at] mcgill [dot] ca).
    • This course is offered in the summer.
    • This course, given at the University’s Gault Nature Reserve in Mont St. Hilaire, has an additional fee of $408.80 which includes a hand lens, a textbook, handouts, lodging and supper each day.
  • BIOL 331 Ecology/Behaviour Field Course (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Methods of sampling natural populations. Testing hypotheses in nature.

    Terms: Fall 2014

    Instructors: Martin J Lechowicz, Simon Reader, Rowan Barrett (Fall)

    • Fall
    • Prerequisites: BIOL 206 and BIOL 215
    • Note: Preregistration in March and April. See Course web page: http://biology.mcgill.ca/undergrad/C331A/index.htm. Meets 12-days just before the fall term, with a project report early in the fall term.
    • The field portion of this course is given at the University's Gault Nature Reserve in Mont St. Hilaire over a two-week period in August. In the fall, students prepare a report based on projects carried out during this field portion. This course has an additional fee of $557.84 which includes room and board and handouts. The Department of Biology subsidizes a portion of the cost for this activity
  • BIOL 334 Applied Tropical Ecology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Relevant to agriculture, forestry, fisheries and conservation of natural resources. Field component taught at the University's Bellairs Research Institute in Barbados, for two weeks in early May. The course is organized in a series of small-group field projects of 2-3 days each. Interested students should contact the Undergraduate Office and fill out an application form.

    Terms: Winter 2015

    Instructors: Neil Price, Thomas E Bureau, Frederic Guichard (Winter)

    • Summer
    • Prerequisites: BIOL 206; and BIOL 215 or both ENVR 200 and ENVR 202; and permission of the instructor.
    • This course, given in Barbados, has an additional fee of $1450 to cover the costs of room and board at Bellairs Research Institute, the course pack and all other expenses during the course. It does not cover tuition, airfare, flight insurance, airport taxes, meals in transit, or the cost of supplementary health insurance. The fee is refundable during the period where a student can drop the course with full refund. The Department of Biology subsidizes a portion of the cost for this activity.
  • BIOL 432 Limnology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : A study of the physical, chemical and biological properties of lakes and other inland waters, with emphasis on their functioning as systems.

    Terms: Fall 2014

    Instructors: Gregor Fussmann, Irene Gregory-Eaves (Fall)

    • Fall
    • 2 hours lecture; 2 weekends at field station equivalent to 3 hours laboratory per week
    • Prerequisites: BIOL 206 and BIOL 215 or permission of instructor.
    • This course, involving two field weekends, has an additional fee of $280, which includes room and board and transportation. The fee is refundable during the period where a student can drop the course with full refund. The Department of Biology subsidizes a portion of the cost for this activity.
    • Restrictions: Not open to students who have taken or are taking ENVB 315.

9 credits chosen from the following list, of which 6 credits must be at the 400 level or above:

  • BIOL 310 Biodiversity and Ecosystems (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Ecological bases of the natural causes and consequences of current global environmental changes, including how biodiversity and ecosystem processes are defined and measured, how they vary in space and time, how they are affected by physical and biological factors, and how they affect each other and human societies.

    Terms: Winter 2015

    Instructors: Thomas Davies (Winter)

    • Winter
    • 3 hours lecture
    • one-day field trip to Mont St-Hilaire
    • Prerequisite: BIOL 215; or ENVR 200 and ENVR 202; MATH 112 or equivalent; or permission of the instructor
  • BIOL 324 Ecological Genetics (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : This course presents evolutionary genetics within an ecological context. The course covers theoretical topics together with relevant data from natural populations of plants and animals.

    Terms: This course is not scheduled for the 2014-2015 academic year.

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall
    • 2 hours lecture, 1 hour seminar
    • Prerequisite: BIOL 202
  • BIOL 373 Biometry (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Elementary statistical methods in biology. Introduction to the analysis of biological data with emphasis on the assumptions behind statistical tests and models. Use of statistical techniques typically available on computer packages.

    Terms: Fall 2014

    Instructors: Brian Leung (Fall)

    • Fall
    • 2 hours lecture and 2 hours laboratory
    • Prerequisite: MATH 112 or equivalent
    • You may not be able to receive credit for this course and other statistic courses. Be sure to check the Course Overlap section under Faculty Degree Requirements in the Arts or Science section of the Calendar.
  • BIOL 434 Theoretical Ecology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Study of theoretical ecology and of mathematical tools available to explore the dynamical behaviour of model populations, communities and ecosystems. Models addressing major ecological theories including population stability, community dynamics and ecosystem functioning, epidemic and disturbance dynamics, spatial models, game theory.

    Terms: Winter 2015

    Instructors: Frederic Guichard (Winter)

    • Winter
    • 3 hours lecture
    • Prerequisites: BIOL 308 or BIOL 309 or permission of instructor.
  • BIOL 510 Advances in Community Ecology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : The origin, maintenance and roles of biological diversity within ecological communities.

    Terms: Fall 2014

    Instructors: Andrew Gonzalez (Fall)

    • Fall
    • 3 hours lecture/seminar
    • Prerequisites: BIOL 308 or GEOG 350 or permission of instructor.
  • BIOL 594 Advanced Evolutionary Ecology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Evolutionary ecology is the study of evolutionary change in natural populations. General predictive approaches in evolutionary ecology, including population genetics, quantitative genetics, optimality, and game theory will be examined. Emphasis will be placed on the mathematical underpinnings of each approach, particularly as they relate to classic and contemporary problems.

    Terms: This course is not scheduled for the 2014-2015 academic year.

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall
    • Prerequisite: BIOL 304 and BIOL 308
    • Restriction: U3 or permission.

Stream 2: Physical Biology (22 credits)

10 credits

  • BIOL 301 Cell and Molecular Laboratory (4 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : An introduction to laboratory techniques with a focus on methods used to investigate fundamental questions in modern cell and molecular biology. Techniques including gene cloning, DNA and protein isolation and manipulation are covered, along with functional analysis of genes and proteins, basic bioinformatics, and computer-based experimental design and data analysis.

    Terms: Fall 2014, Winter 2015

    Instructors: Huanquan Zheng, Paul Harrison, Rodrigo Reyes Lamothe (Fall) Huanquan Zheng, Paul Harrison, Rodrigo Reyes Lamothe (Winter)

    • Fall or Winter
    • 1 hour lecture and one 6-hour laboratory
    • Prerequisites: PHYS 102 or PHYS 142, BIOL 200, BIOL 201 or ANAT/BIOC 212, and BIOL 202. BIOL 206 recommended.
    • Restrictions: Not open to students who have taken or are taking BIOC 300. Requires departmental approval.
    • For approval email anne-marie [dot] sdicu [at] mcgill [dot] ca. Specify your ID number as well as the term and two lab day preferences.
  • BIOL 319 Introduction to Biophysics (3 credits) *

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Emerging physical approaches and quantitative measurement techniques are providing new insights into longstanding biological questions. This course will present underlying physical theory, quantitative measurement techniques, and significant findings in molecular and cellular biophysics. Principles covered include Brownian motion, low Reynolds-number environments, forces relevant to cells and molecules, chemical potentials, and free energies. These principles are applied to enzymes as molecular machines, membranes, DNA, and RNA.

    Terms: Winter 2015

    Instructors: Sabrina Leslie (Winter)

    • Winter. Students with training in physics and biology will be well-suited to the course. .
    • Prerequisites: BIOL 200; MATH 222; PHYS 230 and (PHYS 232 or PHYS 253), or permission of the instructor.
    • Restriction: Not open to students who have taken or are taking PHYS 319
  • PHYS 319 Introduction to Biophysics (3 credits) *

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Emerging physical approaches and quantitative measurement techniques are providing new insights into longstanding biological questions. This course will present underlying physical theory, quantitative measurement techniques, and significant findings in molecular and cellular biophysics. Principles covered include Brownian motion, low Reynolds-number environments, forces relevant to cells and molecules, chemical potentials, and free energies. These principles are applied to enzymes as molecular machines, membranes, DNA, and RNA.

    Terms: Winter 2015

    Instructors: Sabrina Leslie (Winter)

    • Winter. Students with training in physics and biology will be well-suited to the course.
    • Prerequisites: BIOL 200; MATH 222; PHYS 230 and (PHYS 232 or PHYS 253), or permission of the instructor.
    • Restriction: Not open to students who have taken or are taking BIOL 319
  • PHYS 333 Thermal and Statistical Physics (3 credits) **

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Introductory equilibrium statistical mechanics. Quantum states, probabilities, ensemble averages. Entropy, temperature, Boltzmann factor, chemical potential. Photons and phonons. Fermi-Dirac and Bose-Einstein distributions; applications.

    Terms: Winter 2015

    Instructors: Sabrina Leslie (Winter)

    • Winter
    • 3 hours lectures
    • Prerequisite: PHYS 232
    • Restriction: Not open to students taking or having passed PHYS 362
  • PHYS 362 Statistical Mechanics (3 credits) **

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Quantum states and ensemble averages. Fermi-Dirac, Bose-Einstein and Boltzmann distribution functions and their applications.

    Terms: Winter 2015

    Instructors: Mark Sutton (Winter)

    • Winter
    • 3 hours lectures
    • Prerequisites: MATH 248 or equivalents, PHYS 253.
    • Restriction: Honours students, or permission of the instructor
    • Restriction: Not open to students taking or having passed PHYS 333

* Students choose either BIOL 319 or PHYS 319
** Students choose either PHYS 333 or PHYS 362

300-level complementary courses: 6 credits from the following:

  • BIOL 300 Molecular Biology of the Gene (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : A survey of current knowledge and approaches in the area of regulation of gene expression, post-transcriptional control of gene expression, and signal transduction.

    Terms: Fall 2014

    Instructors: Frieder Schöck, Nam Sung Moon (Fall)

    • Fall
    • 3 hours lecture
    • Prerequisites: BIOL 200 and one of BIOL 201 or ANAT/BIOC 212.
  • BIOL 303 Developmental Biology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : A consideration of the fundamental processes and principles operating during embryogenesis. Experimental analyses at the molecular, cellular, and organismal levels will be presented and discussed to provide an overall appreciation of developmental phenomena.

    Terms: Winter 2015

    Instructors: Richard D W Roy, Yong Rao, Daniel Dufort (Winter)

    • Winter
    • 3 hours lecture and 1 hour optional tutorial
    • Prerequisites: BIOL 200, and BIOL 201 or ANAT/BIOC 212.
    • Corequisites: BIOL 202. BIOL 300 strongly recommended.
  • BIOL 306 Neural Basis of Behaviour (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Neural mechanisms of animal behaviour; neuroethology; cellular neurophysiology, integrative networks within nervous systems; neural control of movement; processing of sensory information.

    Terms: Fall 2014

    Instructors: Alanna Watt, Joseph Alan Dent, Jon Sakata (Fall)

    • Fall
    • 3 hours lecture
    • Prerequisites: PHYS 102 or PHYS 142 or CEGEP Physics and one of the following: BIOL 201, ANAT 212, BIOC 212 or NSCI 200
    • Restriction: Not open to students who have taken PSYC 308.
  • BIOL 309 Mathematical Models in Biology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Application of finite difference and differential equations to problems in cell and developmental biology, ecology and physiology. Qualitative, quantitative and graphical techniques are used to analyze mathematical models and to compare theoretical predictions with experimental data.

    Terms: Fall 2014

    Instructors: Leon Glass (Fall)

    • Fall
    • 3 hours lecture
    • Prerequisite: one year of calculus. An additional course in calculus is recommended
  • BIOL 313 Eukaryotic Cell Biology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Cell biology of eukaryotes focusing on the assembly and function of cellular structures, the regulation of transcription; the dynamics of the cytoskeleton and its motors; mechanics of cell division; cell cycle and checkpoints; nuclear dynamics; chromosome structure and behaviour and experimental techniques.

    Terms: Winter 2015

    Instructors: Monique Zetka, Francesco Fagotto (Winter)

    • Winter
    • 3 hours lecture and 1 hour optional tutorial
    • Prerequisites: BIOL 200 and BIOL 201 or ANAT 212/BIOC 212 and BIOL 202.

500-level complementary courses: 6 credits from the following:

  • BIOL 518 Advanced Topics in Cell Biology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Concepts and mechanisms in advanced cell biology, based on genetic, cell biological, biophysical, and computational studies. Emphasis is placed on processes that are evolutionarily conserved, with examples from model organisms and cell-free (in vitro) approaches.

    Terms: Winter 2015

    Instructors: Gary Brouhard, Jacalyn Vogel (Winter)

    • Winter
    • 3 hours seminar
    • Prerequisite: BIOL 313 or permission
  • BIOL 520 Gene Activity in Development (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : An analysis of the role and regulation of gene expression in several models of eukaryotic development. The emphasis will be on critical evaluation of recent literature concerned with molecular or genetic approaches to the problems of cellular differentiation and determination. Recent research reports will be discussed in conferences and analyzed in written critiques.

    Terms: Winter 2015

    Instructors: Richard D W Roy (Winter)

    • Winter
    • 3 hours lecture and discussion
    • Prerequisites: BIOL 300 and BIOL 303 or permission
  • BIOL 524 Topics in Molecular Biology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Molecular genetics and molecular, cellular and developmental biology, including signal transduction, cell differentiation and function, genetic diseases in eukaryotes.

    Terms: Fall 2014

    Instructors: Hugh Clarke, David Dankort (Fall)

    • Fall
    • Prerequisites: BIOL 300 and BIOL 303 or permission.
  • BIOL 530 Advances in Neuroethology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Neural mechanisms underlying behaviour in vertebrate and invertebrate organisms.

    Terms: Winter 2015

    Instructors: Sarah Woolley, Rudiger Krahe (Winter)

    • Winter
    • 3 hours seminar
    • Prerequisite: BIOL 306 or NSCI 200 or NSCI 201 or PHGY 311 or permission of instructor.
  • BIOL 551 Principles of Cellular Control (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Fundamental principles of cellular control, with cell cycle control as a major theme. Biological and physical concepts are brought to bear on control in healthy cells..

    Terms: Winter 2015

    Instructors: Jacalyn Vogel, Paul Francois (Winter)

    • Winter
    • 3 hours lecture
    • Revised Prerequisite: CHEM 115 or 120, MATH 133 and 141, PHYS 142; or equivalents. BIOL 201 or ANAT/BIOC 212. Recommended: COMP 202, PHYS 230 and BIOL/PHYS 319.
  • BIOL 588 Advances in Molecular/Cellular Neurobiology (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Discussion of fundamental molecular mechanisms underlying the general features of cellular neurobiology. An advanced course based on lectures and on a critical review of primary research papers.

    Terms: Fall 2014

    Instructors: Kenneth E M Hastings, Salvatore T Carbonetto (Fall)

    • Fall
    • 1.5 hours lecture, 1.5 hours seminar
    • Prerequisite: BIOL 300 and BIOL 306 or permission
  • PHYS 519 Advanced Biophysics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : An advanced biophysics course, with a special emphasis on stochastic and out of equilibrium physical processes in living matter.

    Terms: Winter 2015

    Instructors: Paul Francois (Winter)

    • Prerequisites: (PHYS 333 or PHYS 362) and (PHYS 340 or PHYS 350), or permission of the instructor.

Theoretical Ecology and Evolutionary Biology, and Physical Biology streams (9 credits)

Recommendations for either Theoretical Ecology and Evolutionary Biology or Physical Biology streams

9 credits from the following:

  • BIOL 466 Independent Research Project 1 (3 credits)

    Offered by: Biology (Faculty of Science)

    Overview

    Biology (Sci) : Independent research project.

    Terms: Fall 2014

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall, Winter or Summer
    • Prerequisite: BIOL 206 or BIOL 301 or other suitable laboratory course.
    • Restrictions: Open only to Biology students. Not open to students who have taken BIOL 477.
    • Projects must be arranged individually with a staff member of the Biology Department and a form from Nancy Nelson, Room W3/25, Stewart Building, must be completed prior to registration.
  • COMP 206 Introduction to Software Systems (3 credits)

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : Comprehensive overview of programming in C, use of system calls and libraries, debugging and testing of code; use of developmental tools like make, version control systems.

    Terms: Fall 2014, Winter 2015

    Instructors: Joseph P Vybihal (Fall) Joseph P Vybihal (Winter)

    • 3 hours
    • Prerequisite: COMP 202 or COMP 250
  • COMP 250 Introduction to Computer Science (3 credits)

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : An introduction to the design of computer algorithms, including basic data structures, analysis of algorithms, and establishing correctness of programs. Overview of topics in computer science.

    Terms: Fall 2014, Winter 2015

    Instructors: Mathieu Blanchette, Jérôme Waldispuhl, Hamed Hatami (Fall) Martin Robillard (Winter)

    • 3 hours
    • Prerequisites: Familiarity with a high level programming language and CEGEP level Math.
    • Restrictions: COMP 203 and COMP 250 are considered to be equivalent from a prerequisite point of view, and cannot both be taken for credit.
  • COMP 251 Algorithms and Data Structures (3 credits)

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : Introduction to algorithm design and analysis. Graph algorithms, greedy algorithms, data structures, dynamic programming, maximum flows.

    Terms: Fall 2014, Winter 2015

    Instructors: Claude Crepeau (Fall) Jérôme Waldispuhl (Winter)

    • 3 hours
    • Prerequisite: COMP 250 or COMP 203.
    • Restrictions: Not open to students who have taken or are taking COMP 252.
  • COMP 350 Numerical Computing (3 credits) *

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : Computer representation of numbers, IEEE Standard for Floating Point Representation, computer arithmetic and rounding errors. Numerical stability. Matrix computations and software systems. Polynomial interpolation. Least-squares approximation. Iterative methods for solving a nonlinear equation. Discretization methods for integration and differential equations.

    Terms: Fall 2014

    Instructors: Xiao-Wen Chang (Fall)

    • 3 hours
    • Prerequisites: MATH 222 and MATH 223 and one of: COMP 202, COMP 208, COMP 250; or equivalents.
  • COMP 364 Computer Tools for Life Sciences (3 credits)

    Offered by: Computer Science (Faculty of Science)

    Overview

    Computer Science (Sci) : Concepts and tools for programmatic storage, retrieval, searching, numerical analysis, and visualization of large biological data sets.

    Terms: Winter 2015

    Instructors: Michael Trevor Hallett (Winter)

    • 3 hours
    • Prerequisite: BIOL 200.
    • Restriction: Not available to students in Computer Science or Joint Computer Science programs.
    • Note: It is recommended that students have already taken a laboratory course (e.g., BIOL 301 Cell and Molecular Laboratory). Topics motivated by biological questions.
  • MATH 314 Advanced Calculus (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Derivative as a matrix. Chain rule. Implicit functions. Constrained maxima and minima. Jacobians. Multiple integration. Line and surface integrals. Theorems of Green, Stokes and Gauss. Fourier series with applications.

    Terms: Fall 2014, Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Prerequisites: MATH 133, MATH 222
    • Restriction: Not open to students who have taken or are taking MATH 248
  • MATH 317 Numerical Analysis (3 credits) *

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Error analysis. Numerical solutions of equations by iteration. Interpolation. Numerical differentiation and integration. Introduction to numerical solutions of differential equations.

    Terms: Fall 2014

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall
    • Prerequisites: MATH 315 or MATH 325 or MATH 263, and COMP 202 or permission of instructor.
  • MATH 319 Introduction to Partial Differential Equations (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : First order equations, geometric theory; second order equations, classification; Laplace, wave and heat equations, Sturm-Liouville theory, Fourier series, boundary and initial value problems.

    Terms: Winter 2015

    Instructors: Peter Bartello (Winter)

    • Winter
    • Prerequisites: MATH 223 or MATH 236, MATH 314, MATH 315
  • MATH 326 Nonlinear Dynamics and Chaos (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Linear systems of differential equations, linear stability theory. Nonlinear systems: existence and uniqueness, numerical methods, one and two dimensional flows, phase space, limit cycles, Poincare-Bendixson theorem, bifurcations, Hopf bifurcation, the Lorenz equations and chaos.

    Terms: Fall 2014

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall
    • Prerequisites: MATH 222, MATH 223
    • Restriction: Not open to students who have taken or are taking MATH 376
  • MATH 327 Matrix Numerical Analysis (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : An overview of numerical methods for linear algebra applications and their analysis. Problem classes include linear systems, least squares problems and eigenvalue problems.

    Terms: Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Winter
    • Prerequisites: MATH 223 or MATH 236 or MATH 247 or MATH 251, COMP 202 or consent of instructor.
  • MATH 348 Topics in Geometry (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Selected topics - the particular selection may vary from year to year. Topics include: isometries in the plane, symmetry groups of frieze and ornamental patterns, equidecomposibility, non-Euclidean geometry and problems in discrete geometry.

    Terms: This course is not scheduled for the 2014-2015 academic year.

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Prerequisite: MATH 133 or equivalent or permission of instructor.
  • MATH 437 Mathematical Methods in Biology (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : The formulation and treatment of realistic mathematical models describing biological phenomena through qualitative and quantitative mathematical techniques (e.g. local and global stability theory, bifurcation analysis and phase plane analysis) and numerical simulation. Concrete and detailed examples will be drawn from molecular and cellular biology and mammalian physiology.

    Terms: Fall 2014

    Instructors: Michael C Mackey, Anmar Khadra (Fall)

    • Taught in alternate years (Fall)
    • Prerequisites: MATH 315 or MATH 325, and MATH 323 or MATH 356, a CEGEP or higher level computer programming course
    • Corequisite: MATH 326 or MATH 376
  • MATH 447 Introduction to Stochastic Processes (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Conditional probability and conditional expectation, generating functions. Branching processes and random walk. Markov chains, transition matrices, classification of states, ergodic theorem, examples. Birth and death processes, queueing theory.

    Terms: Winter 2015

    Instructors: David B Wolfson (Winter)

    • Winter
    • Prerequisite: MATH 323
    • Restriction: Not open to students who have taken or are taking MATH 547.

* Students may take COMP 350 OR MATH 317.

Recommendations for Physical Biology stream

  • CHEM 222 Introductory Organic Chemistry 2 (4 credits)

    Offered by: Chemistry (Faculty of Science)

    Overview

    Chemistry : Modern spectroscopic techniques for structure determination. The chemistry of alcohols, ethers, carbonyl compounds, and amines, with special attention to mechanistic aspects. Special topics.

    Terms: Fall 2014, Winter 2015

    Instructors: Michel Daoust, Mitchell Huot, Laura Pavelka, Dmytro Perepichka, David Noble Harpp (Fall) Michel Daoust, Mitchell Huot, Laura Pavelka, Karine Auclair (Winter)

    • Fall, Winter
    • Prerequisite: CHEM 212 or equivalent.
    • Restriction: Not open to students who have taken an equivalent Organic 2 at CEGEP (see McGill University Basic Math and Sciences Equivalence Table at www.mcgill.ca/mathscitable) or who have or are taking CHEM 234.
  • CHEM 345 Molecular Properties and Structure 1 (3 credits)

    Offered by: Chemistry (Faculty of Science)

    Overview

    Chemistry : An introduction to quantum chemistry covering the historical development, wave theory, methods of quantum mechanics, and applications of quantum chemistry.

    Terms: Fall 2014

    Instructors: Linda G Reven (Fall)

    • Fall
    • Prerequisites: CHEM 213 or CHEM 223 and CHEM 243, MATH 315, and PHYS 142, or permission of instructor.
    • Restriction: For Chemistry Honours and Majors only
  • CHEM 355 Molecular Properties and Structure 2 (3 credits)

    Offered by: Chemistry (Faculty of Science)

    Overview

    Chemistry : A survey of the principles of electronic, vibrational and rotational spectroscopy. Magnetic resonance methods.

    Terms: Winter 2015

    Instructors: Linda G Reven (Winter)

    • Winter
    • Prerequisite: CHEM 345, PHYS 242, or permission of instructor
  • CHEM 514 Biophysical Chemistry (3 credits)

    Offered by: Chemistry (Faculty of Science)

    Overview

    Chemistry : Physical chemistry concepts needed to understand the function of biological systems at the molecular level, including the structure, stability, transport, and interactions of biological macromolecules.

    Terms: Winter 2015

    Instructors: Anthony Mittermaier, Amy Blum (Winter)

    • Winter
    • Prerequisite: CHEM 203 or CHEM 204 or CHEM 223 and CHEM 243, or permission of instructor.
    • Restriction: Not open to students who have taken CHEM 404.
  • PHYS 242 Electricity and Magnetism (2 credits) *

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Properties of electromagnetic fields, dipole and quadropole fields and their interactions, chemical binding of molecules, electromagnetic properties of materials, Maxwell's equations and properties of electromagnetic waves, propagation of waves in media.

    Terms: Fall 2014

    Instructors: Paul Wiseman (Fall)

    • Fall
    • 2 hours lectures
    • Prerequisites: CEGEP Physics, MATH 222
  • PHYS 342 Majors Electromagnetic Waves (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Maxwell's equations. The wave equation. The electromagnetic wave, reflection, refraction, polarization. Guided waves. Transmission lines and wave guides. Vector potential. Radiation. The elemental dipole; the half-wave dipole; vertical dipole; folded dipoles; Yagi antennas. Accelerating charged particles.

    Terms: Winter 2015

    Instructors: James M Cline (Winter)

    • Winter
    • 3 hours lectures
    • Prerequisites: PHYS 340 or PHYS 242, Mathematics MATH 314, MATH 315
  • PHYS 413 Physical Basis of Physiology (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Analytic and computer simulation techniques are used to examine the role of nonlinearities and time delays in determining the dynamic behaviour of physiological control systems and their relation to normal and pathophysiological states. Examples drawn from the control of respiration, cellular proliferation and differentiation, biochemical feedback networks, thermoregulatory mechanisms, and neural feedback.

    Terms: This course is not scheduled for the 2014-2015 academic year.

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall
    • 3 hours lectures
    • Prerequisite: MATH 315, or MATH 325, and permission of the instructor
    • Intended for Major or Honours students in Physics, Physiology, Physiology and Physics, or Mathematics and others with permission
  • PHYS 434 Optics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Geometrical optics, wave optics, lasers, Fourier transform spectroscopy, holography, optical data processing, stellar interferometry.

    Terms: Winter 2015

    Instructors: Lilian Childress (Winter)

    • Winter
    • 3 hours lectures
    • Prerequisite: PHYS 342 or PHYS 352, or permission of the instructor
  • PHYS 446 Majors Quantum Physics (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : de Broglie waves, Bohr atom. Schroedinger equation, wave functions, observables. One dimensional potentials. Schroedinger equation in three dimensions. Angular momentum, hydrogen atom. Spin, experimental consequences.

    Terms: Fall 2014

    Instructors: Andrew Cumming (Fall)

    • Fall
    • 3 hours lectures
    • Prerequisite: PHYS 230 and PHYS 232, or PHYS 251
    • Restriction: Not open to students taking or having taken PHYS 357 or PHYS 457
  • PHYS 534 Nanoscience and Nanotechnology (3 credits)

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Topics include scanning probe microscopy, chemical self-assembly, computer modelling, and microfabrication/micromachining.

    Terms: Fall 2014

    Instructors: Peter H Grutter (Fall)

    • Fall
    • Restriction: U3 or graduate students in Physics, Chemistry, or Engineering, or permission of the instructor.

* PHYS 242 is required for PHYS 342 and PHYS 434.

Recommendations for Theoretical Ecology and Evolutionary Biology stream

  • MATH 204 Principles of Statistics 2 (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : The concept of degrees of freedom and the analysis of variability. Planning of experiments. Experimental designs. Polynomial and multiple regressions. Statistical computer packages (no previous computing experience is needed). General statistical procedures requiring few assumptions about the probability model.

    Terms: Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Winter
    • Prerequisite: MATH 203 or equivalent. No calculus prerequisites
    • Restriction: This course is intended for students in all disciplines. For extensive course restrictions covering statistics courses see Section 3.6.1 of the Arts and of the Science sections of the calendar regarding course overlaps.
    • You may not be able to receive credit for this course and other statistic courses. Be sure to check the Course Overlap section under Faculty Degree Requirements in the Arts or Science section of the Calendar.
  • MATH 242 Analysis 1 (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : A rigorous presentation of sequences and of real numbers and basic properties of continuous and differentiable functions on the real line.

    Terms: Fall 2014

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall
    • Prerequisite: MATH 141
    • Restriction(s): Not open to students who are taking or who have taken MATH 254.
  • MATH 324 Statistics (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Sampling distributions, point and interval estimation, hypothesis testing, analysis of variance, contingency tables, nonparametric inference, regression, Bayesian inference.

    Terms: Fall 2014, Winter 2015

    Instructors: Russell Steele (Winter)

    • Fall and Winter
    • Prerequisite: MATH 323 or equivalent
    • Restriction: Not open to students who have taken or are taking MATH 357
    • You may not be able to receive credit for this course and other statistic courses. Be sure to check the Course Overlap section under Faculty Degree Requirements in the Arts or Science section of the Calendar.
  • MATH 340 Discrete Structures 2 (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Review of mathematical writing, proof techniques, graph theory and counting. Mathematical logic. Graph connectivity, planar graphs and colouring. Probability and graphs. Introductory group theory, isomorphisms and automorphisms of graphs. Enumeration and listing.

    Terms: Winter 2015

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Winter
    • Prerequisites: MATH 235 or MATH 240 or MATH 242.
    • Corequisites: MATH 223 or MATH 236.
    • Restriction: Not open to students who have taken or are taking MATH 343 or MATH 350.
  • MATH 423 Regression and Analysis of Variance (3 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Least-squares estimators and their properties. Analysis of variance. Linear models with general covariance. Multivariate normal and chi-squared distributions; quadratic forms. General linear hypothesis: F-test and t-test. Prediction and confidence intervals. Transformations and residual plot. Balanced designs.

    Terms: Fall 2014

    Instructors: David Stephens (Fall)

    • Fall
    • Prerequisites: MATH 324, and MATH 223 or MATH 236
    • Restriction: Not open to students who have taken or are taking MATH 533.
  • MATH 524 Nonparametric Statistics (4 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Distribution free procedures for 2-sample problem: Wilcoxon rank sum, Siegel-Tukey, Smirnov tests. Shift model: power and estimation. Single sample procedures: Sign, Wilcoxon signed rank tests. Nonparametric ANOVA: Kruskal-Wallis, Friedman tests. Association: Spearman's rank correlation, Kendall's tau. Goodness of fit: Pearson's chi-square, likelihood ratio, Kolmogorov-Smirnov tests. Statistical software packages used.

    Terms: Fall 2014

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Fall
    • Prerequisite: MATH 324 or equivalent
    • Restriction: Not open to students who have taken MATH 424
  • MATH 525 Sampling Theory and Applications (4 credits)

    Offered by: Mathematics and Statistics (Faculty of Science)

    Overview

    Mathematics & Statistics (Sci) : Simple random sampling, domains, ratio and regression estimators, superpopulation models, stratified sampling, optimal stratification, cluster sampling, sampling with unequal probabilities, multistage sampling, complex surveys, nonresponse.

    Terms: This course is not scheduled for the 2014-2015 academic year.

    Instructors: There are no professors associated with this course for the 2014-2015 academic year.

    • Prerequisite: MATH 324 or equivalent
    • Restriction: Not open to students who have taken MATH 425
  • PHYS 333 Thermal and Statistical Physics (3 credits) **

    Offered by: Physics (Faculty of Science)

    Overview

    Physics : Introductory equilibrium statistical mechanics. Quantum states, probabilities, ensemble averages. Entropy, temperature, Boltzmann factor, chemical potential. Photons and phonons. Fermi-Dirac and Bose-Einstein distributions; applications.

    Terms: Winter 2015

    Instructors: Sabrina Leslie (Winter)

    • Winter
    • 3 hours lectures
    • Prerequisite: PHYS 232
    • Restriction: Not open to students taking or having passed PHYS 362

* PHYS 333 is now required for the Physical Biology stream

Faculty of Science—2014-2015 (last updated Feb. 18, 2014) (disclaimer)